PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000639.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 229aa    MW: 24931.4 Da    PI: 6.8882
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000639.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000176284123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C + F ++  L  H++ H
  Itr_sc000639.1_g00006.1 62 FSCNYCQRKFYSSQALGGHQNAH 84
                             89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.59E-66089No hitNo description
PROSITE profilePS5015711.4276289IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MPEGVVEDIS SQNSNDGDEN EEHDDMKPSC DDDGSPELNL LDSLETTAAG GSSSDQGSPR  60
VFSCNYCQRK FYSSQALGGH QNAHKRERTL AKKGQRLGPY FMAAAMAFGH SNHHHQQYYS  120
TMASSSRSLP LHNPLGIHPH SMILKPSSIH SLHERRSRPI ITQQPAVGKL SVPNFHISPP  180
TNMERSSTTL LSPQESATGA GFWAASSSNH LKNNSSRGDL PNLDLSLSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282938.16e-46PREDICTED: zinc finger protein 3-like
RefseqXP_002527314.15e-46PREDICTED: zinc finger protein 1
SwissprotQ424855e-30ZFP1_ARATH; Zinc finger protein 1
TrEMBLB9SMU56e-46B9SMU5_RICCO; Zinc finger protein, putative
TrEMBLF6H3J56e-46F6H3J5_VITVI; Putative uncharacterized protein
STRINGVIT_04s0008g05930.t012e-45(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-32C2H2 family protein